Multiphoton imaging analysis#
Overview#
This course will be delivered by Petr Znamenskiy and will cover:
What do the data values in a microscopy image represent? How do they relate to the number of photons hitting the detector?
Motion correction for 2p imaging
Segmentation and activity extraction
Neuropil contamination and what to do about it
CaImAn and other end-to-end pipelines
Prerequisites#
Basic Python knowledge