# Multiphoton imaging analysis

## Overview
This course will be delivered by [Petr Znamenskiy](https://www.crick.ac.uk/research/labs/petr-znamenskiy) and will cover:

* What do the data values in a microscopy image represent? How do they relate to the number of photons hitting the detector?
* Motion correction for 2p imaging
* Segmentation and activity extraction
* Neuropil contamination and what to do about it
* [CaImAn](https://caiman.readthedocs.io/en/latest/) and other end-to-end pipelines

## Prerequisites
* Basic Python knowledge

## Materials
* [Notebooks & Data](https://drive.google.com/drive/folders/1gf_FNmI1mgAAeFcDshFZ3m97ucGwuroz?usp=drive_link)