# Introduction to high-performance computing with Linux

## Overview
The aim of this one-day course is to introduce Linux and bash to novice users, providing the fundamental knowledge to 
effectively use the SWC/GNU High Performance Computing (HPC) system.

## Content
### Introduction to Linux & Bash

#### Materials
- [Slides](../materials/Introduction_to_Linux.pdf)

### Introduction to HPC 

Introduction to the SWC HPC system:
* Overview of the SWC/GCNU HPC system
* SLURM job scheduler
* Data storage
* Interactive jobs
* Batch jobs
* Array jobs

#### Materials
- [Slides](../materials/Introduction_to_HPC.pdf)


### Applied HPC Use
Running pose estimation with [SLEAP](https://sleap.ai)

#### Materials
- [GitHub repository](https://github.com/neuroinformatics-unit/swc-hpc-pose-estimation) with example scripts
- [Presentation slides](https://neuroinformatics-unit.github.io/swc-hpc-pose-estimation)